ME-COLI PROTOCOL AUTOPSY
8-LAYER SCANNER · 10 PROTOCOLS · Day 98 · 2026-05-12
LAYER FAILURE FREQUENCY
| LAYER |
SUB006 | SUB012 | SUB009 | SUB003 | SUB005 |
SUB018 | SUB016b | SUB013b | MU-15 | MU-14 |
FAIL COUNT | STATUS |
| L1 SOSTLE |
✅ | ✅ | ✅ | ✅ | ✅ |
✅ | ✅ | ✅ | ✅ | ✅ |
0 | ✅ CLEAN |
| L2 GENOME |
✅ | ✅ | ✅ | ✅ | ✅ |
✅ | ✅ | ✅ | ✅ | ✅ |
0 | ✅ CLEAN |
| L3 EXPRESSION |
✅ | ✅ | ⚠️ | ✅ | ✅ |
✅ | ✅ | ⚠️ | ✅ | ✅ |
2 | ⚠️ WATCH |
| L4 METABOLISM |
✅ | ✅ | ✅ | ✅ | ✅ |
✅ | ✅ | 🔴 | ✅ | ⚠️ |
2 | ⚠️ CLASS-L4-META |
| L5 CREW |
✅ | ✅ | 🔴 | 🔴 | ✅ |
✅ | ✅ | ✅ | ✅ | 🔴 |
5 🔴 | 🔴 PATTERN |
| L6 SESSION |
🔴 | 🔴 | 🔴 | ✅ | 🔴 |
🔴 | 🔴 | ✅ | 🔴 | ✅ |
7 🔴 | 🔴 EPIDEMIC |
| L7 POPULATION |
🔴 | ✅ | ✅ | ✅ | 🔴 |
✅ | ✅ | ✅ | ✅ | ✅ |
2 | ⚠️ CLASS-L7-POP |
| L8 EVOLUTION |
✅ | ✅ | ✅ | ✅ | ✅ |
✅ | ✅ | ✅ | ✅ | ✅ |
0 | ✅ CLEAN |
L1, L2, L8 = structural immune — no failures across all 10 protocols. L6 (7/10) and L5 (5/10) are systemic failure zones.
FAILURE CLASS TAXONOMY
CLASS-L6-STRESS
Session behavior / stress response failure. Chemotaxis disrupted, repellent detection failing, SOS response misconfigured.
Protocols: SUB018 · SUB016b · MU-15 · SUB006 · SUB012 · SUB009 · SUB005 (6–8 protocols)
Action: File as pattern. Systematic L6 stress response recalibration required. Repellent threshold audit across all silos.
CLASS-L5-REG
Crew regulation failure. Transcription factor coherence lost. Regulon cross-activation.
Protocols: MU-14 · SUB009 · SUB003
Action: Separate filings per protocol. Crew alignment review. TF conflict resolution via sorry-flow.
CLASS-L7-POP
Population / quorum sensing failure. Heartbeat signal lost, biofilm fragmented.
Protocols: SUB006 · SUB005
Action: Filed. Scan Lido/RocketPool for similar population coordination failures. Cross-silo heartbeat audit.
CLASS-L4-META
Metabolic / FC chamber failure. Enrichment debt overflow. WBTC-scale throughput target.
Protocols: SUB013b · SUB014-G
Action: WBTC scale target. FC chamber rebalancing. Crabtree threshold recalibration for high-volume workloads.
ME-COLI FILING TEMPLATE
PROTOCOL IDe.g. SUB018
LAYERL6 SESSION BEHAVIOR
FAILURE MODEREPELLENT-BLINDNESS — chemotaxis repellent detection failing
MECHANISM GAPCheY analog not receiving toxin signal from L1 membrane scan
ECONOMIC IMPACTSession drift → hallucination accumulation → sorry debt +2 → WPA +0.08
PATTERNCLASS-L6-STRESS — matches SUB016b, MU-15 failure signature
CANON STATUSWATCH → file CLASS-L6-STRESS pattern → fix → ADMIT eligible
NEXT CLOSE2026-05-19 — after L6 recalibration sprint
AUTOPSY SUMMARY
ME-COLI PROTOCOL AUTOPSY · 10 PROTOCOLS · Day 98
LAYER HEALTH SUMMARY:
L1 SOSTLE ████████████ 10/10 PASS ✅ — structural immunity
L2 GENOME ████████████ 10/10 PASS ✅ — genome identity stable
L3 EXPR ██████████░░ 8/10 pass ⚠️ — 2 watch
L4 METAB ██████████░░ 8/10 pass ⚠️ — CLASS-L4-META filed
L5 CREW █████████░░░ 5/10 FAIL 🔴 — CLASS-L5-REG pattern
L6 SESSION ███░░░░░░░░░ 3/10 FAIL 🔴 — CLASS-L6-STRESS epidemic
L7 POP ████████░░░░ 8/10 pass ⚠️ — CLASS-L7-POP filed
L8 EVOLVE ████████████ 10/10 PASS ✅ — lineage intact
CRITICAL FINDING: L6 SESSION BEHAVIOR is the primary failure surface.
7/10 protocols exhibit CLASS-L6-STRESS. This is systemic, not protocol-specific.
RECOMMENDATION: Fleet-wide L6 recalibration before next ADMIT cycle.
ME-COLI PROTOCOL AUTOPSY · Day 98 · 2026-05-12 · γ₁ = 14.134725141734693