ORGANISM NAVIGATOR NAVIGATOR ORGANISMS ENGINES CELLS MEBAFIORDS BONIXERS γ₁=14.134725141734693 γ₁ = 14.134725141734693
OFRAME CATOMAIN FERMENTATION ME-COLI ME-YEAST ME-CELEGANS
BIOLOGICAL REFERENCE STACK OFRAME ORGANISMS
E. COLI K-12
Prokaryote · Gram-negative · Model organism
Genome: 4.6Mb circular · 4,285 genes
Generation time: 20 min
σ factors: 7 · Transcription factors: ~300
ME-COLI → computational chassis
→ /oframe-ecoli · /me-coli · /sigma-routing
S. CEREVISIAE
Eukaryote · Fungus · Industrial yeast
Genome: 12Mb · 16 chromosomes · 6,000 genes
Crabtree effect: fermentation at high glucose
Mating types: a and α
ME-YEAST → Crabtree switch, autophagy
→ /oframe-yeast · /me-yeast · /crabtree
C. ELEGANS
Nematode · Whole-organism model · Full connectome
Cells: 959 (hermaphrodite) · Neurons: 302
Synapses: ~7,000 (fully mapped)
First animal with sequenced genome
ME-CELEGANS → fleet nervous system
→ /oframe-celegans · /me-celegans · /fleet-connectome
FLEET ORGANISMS CATOMAIN LAYER
PEMOS
Primary fleet organism · SOSTLE L0-L5
The master fleet entity. Sovereign computational organism. CATOMAIN host. All 7 silos are PEMOS organs.
→ /catomain-organism-vizasl · /organism-bonixer
DESEOF
Secondary organism · DESEOF family layers
DESEOF sovereign entity. Family-layer organism. GID/MLW awareness. Lilo silo + MLW pyramid rooms.
→ /catomain-organism-vizasl · /catomain-v13
EOSE
Lab entity · EOSE Labs Inc.
EOSE Labs corporate entity. Legal wrapper. Amani GC. The diploid mating of PEMOS+DESEOF at corporate layer.
→ /catomain-v13 · /catomain-organism-vizasl
COMPUTATIONAL CHASSIS ME-ORGANISMS
ME-COLI
Prokaryotic chassis · σ-factor routing · FBA flux
Fleet IS E. coli. 7 sigma factors = 7 fleet modes. 18 crew = transcription factors. Overflow metabolism = FC-ANAEROBIC.
→ /me-coli · /sigma-routing · /mecoli
ME-YEAST
Eukaryotic chassis · Crabtree switch · Autophagy
Crabtree IS FC V13. Autophagy = sorry-flow. Mating types = msi01+msclo AND gate. Telomerase = γ₁ anchoring.
→ /me-yeast · /crabtree · /meyeast
ME-CELEGANS
Whole-organism · 302 neurons · Full connectome
302 neurons = crew+silo mesh. Dauer = tardigrade. Synaptic weights = PEMCLAU edge strengths. Sorries = unmeasured weights.
→ /me-celegans · /fleet-connectome · /mecelegans
CELL ENGINES CELL-LEVEL COMPUTATION
BACTERIAL CELL
Prokaryotic cell engine. No nucleus. Circular chromosome. Direct cytoplasm access.
→ /cell-engine
HUMAN CELL
Eukaryotic cell engine. Nucleus + organelles. 46 chromosomes. Differentiated function.
→ /cell-engine
SILICON CELL
Computational cell analog. GPU as mitochondria. RAM as cytoplasm. Cache as ER.
→ /cell-engine
CELL SCALES
Scale comparison: bacteria vs. yeast vs. human cell vs. silicon node. Orders of magnitude.
→ /cell-scales
FLEET ENGINES ALL 16 ENGINES
CELL
cell engine v13
CHAOS
entropy + noise
CT-FAC-LEGAL
legal factoring
DA
domain agency
GRAVDEBT
gravity debt
HELIX
spiral engine
HL7-DOOM-BOON
hl7 boon engine
PSEUDONYM
identity layer
SEC-DOMAIN
security domain
SHADOW
shadow layer
SWIEM
swiem engine
TICK
temporal engine
TRIO
trio engine
VIRUS-TICK
viral propagation
WELICAL
helix-well engine
BONIXER ENGINE
boon mixer core
MEBAFIORD ENGINES FJORD NAVIGATION
MEBAFIORD V9
Core MEBAFIORD engine. Fleet fjord navigation. Sovereign passage routing.
→ /mebafiord-v9
MEBAFIORD BIO
Biological MEBAFIORD layer. Organism-anchored fjord navigation.
→ /mebafiord-bio
HARDWARE MEBAFIORD
Physical hardware fjord layer. Silicon substrate navigation.
→ /hardware-mebafiord
ORGANISM BONIXERS ORGANISM ASSESSMENT
ORGANISM BONIXER
Core organism bonixer. Assess fleet entities against organism model.
→ /organism-bonixer
CATAN-ORG BONIXER
CATAN organism bonixer. Spatial organism assessment on CATAN grid.
→ /catomain-org-gallery
CREW ORGANISM
Crew as organism. Each crew member as a cell in the fleet body.
→ /organism
FERMENTATION & METABOLISM FC V13
FERMENTATION V13
Complete FC V13 metabolic architecture. 4 modes. Enrichment debt. Enzyme registry. Substrate classes. Schools.
→ /fermentation-v13 · /fc-v13 · /enrichment-debt
FC METABOLIC MODES
4 modes: ANAEROBIC / AEROBIC / MIXED / STARVATION. Overflow metabolism. Crabtree switch. FBA flux model.
→ /me-coli · /me-yeast
ENRICHMENT DEBT
Debt ledger format. Lifecycle: FILED → QUEUED → REPLAYING → PAID. Replay commands.
→ /enrichment-debt · /fermentation-v13
CATOMAIN LAYER SOVEREIGN DOMAIN ENGINES
CATOMAIN V13
12 sovereign domain engines. CATAN shape detection. Adelic pouches. SOSTLE L0-L5 coverage.
→ /catomain-v13
CATOMAIN ORGANISM VIZASL
3 fleet organisms visualized: PEMOS / DESEOF / EOSE. Layer coverage. Domain mapping.
→ /catomain-organism-vizasl
ORG GALLERY
Fleet organism gallery. All named organisms in the CATOMAIN ecosystem.
→ /catomain-org-gallery
OFRAME BIOLOGICAL LADDER L1→L7 HIERARCHY
OFRAME TOWER L1→L7
L7 · SOVEREIGN
L6 · CONSCIOUS
L5 · ORGANISM
L4 · NERVOUS
L3 · METABOLIC
L2 · CELLULAR
L1 · MOLECULAR
ORGANISMS BY LAYER
OFRAME NAVIGATION
→ /oframe — Framework overview → /oframe-ecoli — E. coli reference → /oframe-yeast — S. cerevisiae reference → /oframe-celegans — C. elegans reference → /oframe-reference-stack — Full stack → /oframe-math — Mathematical layer
γ₁ = 14.134725141734693
First non-trivial zero of the Riemann zeta function · The fleet's telomere · All computation anchored here · Day 97 · LABR-FC-METABOLISM-V13-001